Index

_

__call__() (noctiluca.taggedset.TaggedSet method)

__getitem__() (noctiluca.trajectory.Trajectory method)

A

abs() (noctiluca.trajectory.Trajectory method) acceptance_rate() (noctiluca.util.mcmc.MCMCRun method) ACorr() (in module noctiluca.analysis.p2)

ACov() (in module noctiluca.analysis.p2) add() (noctiluca.taggedset.TaggedSet method) addTags() (noctiluca.taggedset.TaggedSet method) apply() (noctiluca.taggedset.TaggedSet method)

B

best_sample_logL() (noctiluca.util.mcmc.MCMCRun method)

C

callback_logging() (noctiluca.util.mcmc.Sampler method) callback_stopping() (noctiluca.util.mcmc.Sampler method) check_group_or_attr() (in module noctiluca.io.hdf5) chunky() (in module noctiluca.parallel) config (noctiluca.util.mcmc.Sampler attribute)

configure() (noctiluca.util.mcmc.Sampler method) copySelection() (noctiluca.taggedset.TaggedSet method) count_valid_frames() (noctiluca.trajectory.Trajectory method) csv() (in module noctiluca.io.load) (in module noctiluca.io.write)

D

d (noctiluca.trajectory.Trajectory property) deleteSelection() (noctiluca.taggedset.TaggedSet method) diff() (in module noctiluca.analysis.p2) (noctiluca.trajectory.Trajectory method)

dims() (noctiluca.trajectory.Trajectory method) DummyExecutor (class in noctiluca.parallel)

E

evalSPT() (in module noctiluca.io.load)

evaluate() (noctiluca.util.mcmc.MCMCRun method)

F

F (noctiluca.trajectory.Trajectory property)

H

hdf5() (in module noctiluca.io.load) (in module noctiluca.io.write)

hdf5_subTaggedSet() (in module noctiluca.io.write)

L

logL() (noctiluca.util.mcmc.Sampler method) logLs (noctiluca.util.mcmc.MCMCRun attribute)

logLs_trunc() (noctiluca.util.mcmc.MCMCRun method) ls() (in module noctiluca.io.hdf5)

M

make_TaggedSet() (in module noctiluca.util.userinput) make_Trajectory() (in module noctiluca.util.userinput) makeSelection() (noctiluca.taggedset.TaggedSet method) makeTagsSet() (noctiluca.taggedset.TaggedSet static method) map() (noctiluca.parallel.Parallelize method) map_unique() (noctiluca.taggedset.TaggedSet method) mat() (in module noctiluca.io.write) MCMCRun (class in noctiluca.util.mcmc) mergein() (noctiluca.taggedset.TaggedSet method) module noctiluca.analysis.p2 noctiluca.io.hdf5 noctiluca.io.load noctiluca.io.write noctiluca.parallel noctiluca.plot noctiluca.taggedset noctiluca.trajectory noctiluca.util.clean noctiluca.util.mcmc noctiluca.util.userinput

MSD() (in module noctiluca.analysis.p2) msd_overview() (in module noctiluca.plot)

N

N (noctiluca.trajectory.Trajectory property) new_group() (in module noctiluca.io.hdf5) noctiluca.analysis.p2 module noctiluca.io.hdf5 module noctiluca.io.load module noctiluca.io.write module noctiluca.parallel module

noctiluca.plot module noctiluca.taggedset module noctiluca.trajectory module noctiluca.util.clean module noctiluca.util.mcmc module noctiluca.util.userinput module normalize() (in module noctiluca.analysis.p2)

O

offset() (noctiluca.trajectory.Trajectory method)

P

P2() (in module noctiluca.analysis.p2) P2dataset() (in module noctiluca.analysis.p2)

P2traj() (in module noctiluca.analysis.p2) Parallelize (class in noctiluca.parallel) propose_update() (noctiluca.util.mcmc.Sampler method)

R

read() (in module noctiluca.io.hdf5) read_dataset_as_ndarray() (in module noctiluca.io.hdf5) read_generic_class() (in module noctiluca.io.hdf5) read_group_as_dict() (in module noctiluca.io.hdf5) read_iterable() (in module noctiluca.io.hdf5) read_None() (in module noctiluca.io.hdf5)

refineSelection() (noctiluca.taggedset.TaggedSet method) registrystring() (in module noctiluca.io.hdf5) relative() (noctiluca.trajectory.Trajectory method) rescale() (noctiluca.trajectory.Trajectory method) restoreSelection() (noctiluca.taggedset.TaggedSet method) run() (noctiluca.util.mcmc.Sampler method)

S

Sampler (class in noctiluca.util.mcmc) samples (noctiluca.util.mcmc.MCMCRun attribute) saveSelection() (noctiluca.taggedset.TaggedSet method) SD() (in module noctiluca.analysis.p2) serial_map() (noctiluca.parallel.Parallelize static method)

SP() (in module noctiluca.analysis.p2) spatial() (in module noctiluca.plot) split_dataset_at_big_steps() (in module noctiluca.util.clean) split_trajectory_at_big_steps() (in module noctiluca.util.clean) submit() (noctiluca.parallel.DummyExecutor method)

T

T (noctiluca.trajectory.Trajectory property) TaggedSet (class in noctiluca.taggedset)

tagset() (noctiluca.taggedset.TaggedSet method) Trajectory (class in noctiluca.trajectory)

V

VACorr() (in module noctiluca.analysis.p2)

VACov() (in module noctiluca.analysis.p2) vstime() (in module noctiluca.plot)

W

write() (in module noctiluca.io.hdf5) write_dict() (in module noctiluca.io.hdf5) write_generic_class() (in module noctiluca.io.hdf5)

write_iterable() (in module noctiluca.io.hdf5) write_ndarray() (in module noctiluca.io.hdf5) write_None() (in module noctiluca.io.hdf5) writer() (in module noctiluca.io.hdf5)